rs31070685 SNP Detail

Summary

• ID
  rs31070685
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142325743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGA AAAGAAAGAA ATCCCTTTTG
  Y
  TTACTCTTAA ATTCTACATG TCTAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
ss47013015	NES10856801	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	T	T	T	C	C	T
ss136016107	ENSMUSSNP6436821	ENSEMBL	ENSEMBL_Sanger	f	SNP	C						T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
rs31070685					SNP	C	C	C	C	C	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47013015	NES10856801	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142325743 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	681 bp upstream
Gbp2b	guanylate binding protein 2b	803 bp downstream
Gm54185	predicted gene, 54185	700 bp upstream
Rr398088	regulatory region 398088	within coordinates
Rr586457	regulatory region 586457	1006 bp distal
Rr586458	regulatory region 586458	130 bp proximal
Rr586459	regulatory region 586459	631 bp proximal
Tssr32216	transcription start site region 32216	1797 bp downstream
Tssr32217	transcription start site region 32217	1759 bp downstream
Tssr32218	transcription start site region 32218	1705 bp downstream
Tssr32219	transcription start site region 32219	1668 bp downstream
Tssr32220	transcription start site region 32220	1654 bp downstream
Tssr32221	transcription start site region 32221	1636 bp downstream
Tssr32222	transcription start site region 32222	1580 bp downstream
Tssr32223	transcription start site region 32223	1523 bp downstream
Tssr32224	transcription start site region 32224	1469 bp downstream
Tssr32225	transcription start site region 32225	1131 bp downstream
Tssr32226	transcription start site region 32226	1091 bp downstream
Tssr32227	transcription start site region 32227	614 bp upstream
Tssr32228	transcription start site region 32228	665 bp upstream
Tssr32229	transcription start site region 32229	704 bp upstream
Tssr32230	transcription start site region 32230	740 bp upstream
Tssr32231	transcription start site region 32231	757 bp upstream
Tssr32232	transcription start site region 32232	1291 bp upstream
Tssr35947	transcription start site region 35947	801 bp upstream