rs31069497 SNP Detail

Summary

• ID
  rs31069497
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142324915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCA GAAGCACTGT TTAAGTGAAA
  R
  CTGTTAATAA AAATGATTAA GCTTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss47013005	NES10856785	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	G	A		A		G
ss136016074	ENSMUSSNP1276225	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321003278	CHEV_3_142282118	CHEVERUD	SCREENING_POP	f	SNP							G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs31069497					SNP	A	A	A	A	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47013005	NES10856785	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142324915 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	1509 bp upstream
Gbp2b	guanylate binding protein 2b	mRNA-UTR
Gm54185	predicted gene, 54185	within coordinates
Rr398088	regulatory region 398088	728 bp upstream
Rr586457	regulatory region 586457	178 bp distal
Rr586458	regulatory region 586458	958 bp proximal
Rr586459	regulatory region 586459	1459 bp proximal
Tssr32216	transcription start site region 32216	969 bp downstream
Tssr32217	transcription start site region 32217	931 bp downstream
Tssr32218	transcription start site region 32218	877 bp downstream
Tssr32219	transcription start site region 32219	840 bp downstream
Tssr32220	transcription start site region 32220	826 bp downstream
Tssr32221	transcription start site region 32221	808 bp downstream
Tssr32222	transcription start site region 32222	752 bp downstream
Tssr32223	transcription start site region 32223	695 bp downstream
Tssr32224	transcription start site region 32224	641 bp downstream
Tssr32225	transcription start site region 32225	303 bp downstream
Tssr32226	transcription start site region 32226	263 bp downstream
Tssr32227	transcription start site region 32227	1442 bp upstream
Tssr32228	transcription start site region 32228	1493 bp upstream
Tssr32229	transcription start site region 32229	1532 bp upstream
Tssr32230	transcription start site region 32230	1568 bp upstream
Tssr32231	transcription start site region 32231	1585 bp upstream
Tssr35947	transcription start site region 35947	21 bp downstream