rs31069495 SNP Detail

Summary

• ID
  rs31069495
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142324801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGA GGCTCATAAT CACAGTGCCA
  M
  CTCTTGTGAA ACCAACCTTC ATTTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47013003	NES10856783	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	C	C	A	C	A	C
ss136016065	ENSMUSSNP3995804	ENSEMBL	ENSEMBL_Sanger	f	SNP	A						C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs31069495					SNP	A	A	A	A	A	C	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47013003	NES10856783	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142324801 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	1623 bp upstream
Gbp2b	guanylate binding protein 2b	mRNA-UTR
Gm54185	predicted gene, 54185	within coordinates
Rr398088	regulatory region 398088	842 bp upstream
Rr586457	regulatory region 586457	64 bp distal
Rr586458	regulatory region 586458	1072 bp proximal
Rr586459	regulatory region 586459	1573 bp proximal
Tssr32216	transcription start site region 32216	855 bp downstream
Tssr32217	transcription start site region 32217	817 bp downstream
Tssr32218	transcription start site region 32218	763 bp downstream
Tssr32219	transcription start site region 32219	726 bp downstream
Tssr32220	transcription start site region 32220	712 bp downstream
Tssr32221	transcription start site region 32221	694 bp downstream
Tssr32222	transcription start site region 32222	638 bp downstream
Tssr32223	transcription start site region 32223	581 bp downstream
Tssr32224	transcription start site region 32224	527 bp downstream
Tssr32225	transcription start site region 32225	189 bp downstream
Tssr32226	transcription start site region 32226	149 bp downstream
Tssr32227	transcription start site region 32227	1556 bp upstream
Tssr32228	transcription start site region 32228	1607 bp upstream
Tssr32229	transcription start site region 32229	1646 bp upstream
Tssr32230	transcription start site region 32230	1682 bp upstream
Tssr32231	transcription start site region 32231	1699 bp upstream
Tssr35947	transcription start site region 35947	135 bp downstream