rs31069494 SNP Detail

Summary

• ID
  rs31069494
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142324788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCGT TCTATTCCTC TGAGGCTCAT
  R
  ATCACAGTGC CAACTCTTGT GAAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
ss47013001	NES10856781	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	G	G	A	A	G
ss136016062	ENSMUSSNP1439104	ENSEMBL	ENSEMBL_Sanger	f	SNP						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
rs31069494					SNP	A	A	A	A	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47013001	NES10856781	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142324788 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	1636 bp upstream
Gbp2b	guanylate binding protein 2b	mRNA-UTR
Gm54185	predicted gene, 54185	within coordinates
Rr398088	regulatory region 398088	855 bp upstream
Rr586457	regulatory region 586457	51 bp distal
Rr586458	regulatory region 586458	1085 bp proximal
Rr586459	regulatory region 586459	1586 bp proximal
Tssr32216	transcription start site region 32216	842 bp downstream
Tssr32217	transcription start site region 32217	804 bp downstream
Tssr32218	transcription start site region 32218	750 bp downstream
Tssr32219	transcription start site region 32219	713 bp downstream
Tssr32220	transcription start site region 32220	699 bp downstream
Tssr32221	transcription start site region 32221	681 bp downstream
Tssr32222	transcription start site region 32222	625 bp downstream
Tssr32223	transcription start site region 32223	568 bp downstream
Tssr32224	transcription start site region 32224	514 bp downstream
Tssr32225	transcription start site region 32225	176 bp downstream
Tssr32226	transcription start site region 32226	136 bp downstream
Tssr32227	transcription start site region 32227	1569 bp upstream
Tssr32228	transcription start site region 32228	1620 bp upstream
Tssr32229	transcription start site region 32229	1659 bp upstream
Tssr32230	transcription start site region 32230	1695 bp upstream
Tssr32231	transcription start site region 32231	1712 bp upstream
Tssr35947	transcription start site region 35947	148 bp downstream