rs31068612 SNP Detail

Summary

• ID
  rs31068612
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142324607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGC AGAATGCATA GGCGAGTGGG
  M
  GTTGCACCTC CCCCATTGAG AGAAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
ss47012999	NES10856780	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	A	A	C	C	A
ss136016053	ENSMUSSNP4920587	ENSEMBL	ENSEMBL_Sanger	f	SNP							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
rs31068612					SNP	C	C	C	C	C	A	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47012999	NES10856780	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142324607 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	1817 bp upstream
Gbp2b	guanylate binding protein 2b	mRNA-UTR
Gm54185	predicted gene, 54185	within coordinates
Rr398088	regulatory region 398088	1036 bp upstream
Rr586457	regulatory region 586457	within coordinates
Rr586458	regulatory region 586458	1266 bp proximal
Rr586459	regulatory region 586459	1767 bp proximal
Tssr32216	transcription start site region 32216	661 bp downstream
Tssr32217	transcription start site region 32217	623 bp downstream
Tssr32218	transcription start site region 32218	569 bp downstream
Tssr32219	transcription start site region 32219	532 bp downstream
Tssr32220	transcription start site region 32220	518 bp downstream
Tssr32221	transcription start site region 32221	500 bp downstream
Tssr32222	transcription start site region 32222	444 bp downstream
Tssr32223	transcription start site region 32223	387 bp downstream
Tssr32224	transcription start site region 32224	333 bp downstream
Tssr32225	transcription start site region 32225	within coordinates
Tssr32226	transcription start site region 32226	36 bp upstream
Tssr32227	transcription start site region 32227	1750 bp upstream
Tssr32228	transcription start site region 32228	1801 bp upstream
Tssr32229	transcription start site region 32229	1840 bp upstream
Tssr32230	transcription start site region 32230	1876 bp upstream
Tssr32231	transcription start site region 32231	1893 bp upstream
Tssr35947	transcription start site region 35947	329 bp downstream