rs31068610 SNP Detail

Summary

• ID
  rs31068610
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142324552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGG TTGCTGGATG AGCAGAGTAT
  Y
  TCATTGGAGA GGAGAAGAAA ATTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47012997	NES10856779	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31068610					SNP	T	T	T	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47012997	NES10856779	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142324552 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	1872 bp upstream
Gbp2b	guanylate binding protein 2b	mRNA-UTR
Gm54185	predicted gene, 54185	within coordinates
Rr398088	regulatory region 398088	1091 bp upstream
Rr586457	regulatory region 586457	within coordinates
Rr586458	regulatory region 586458	1321 bp proximal
Rr586459	regulatory region 586459	1822 bp proximal
Tssr32216	transcription start site region 32216	606 bp downstream
Tssr32217	transcription start site region 32217	568 bp downstream
Tssr32218	transcription start site region 32218	514 bp downstream
Tssr32219	transcription start site region 32219	477 bp downstream
Tssr32220	transcription start site region 32220	463 bp downstream
Tssr32221	transcription start site region 32221	445 bp downstream
Tssr32222	transcription start site region 32222	389 bp downstream
Tssr32223	transcription start site region 32223	332 bp downstream
Tssr32224	transcription start site region 32224	278 bp downstream
Tssr32225	transcription start site region 32225	43 bp upstream
Tssr32226	transcription start site region 32226	91 bp upstream
Tssr32227	transcription start site region 32227	1805 bp upstream
Tssr32228	transcription start site region 32228	1856 bp upstream
Tssr32229	transcription start site region 32229	1895 bp upstream
Tssr32230	transcription start site region 32230	1931 bp upstream
Tssr32231	transcription start site region 32231	1948 bp upstream
Tssr35947	transcription start site region 35947	384 bp downstream