rs31068606 SNP Detail

Summary

• ID
  rs31068606
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142324435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAA ACATGATAAA AATCTGAACA
  Y
  ATCCATGGAA CACAGCTCCT AGGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss47012993	NES10856777	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T		T	T
ss321003276	CHEV_3_142281638	CHEVERUD	SCREENING_POP	f	SNP								C			T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs31068606					SNP	T	T	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47012993	NES10856777	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142324435 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	1989 bp upstream
Gbp2b	guanylate binding protein 2b	mRNA-UTR
Gm54185	predicted gene, 54185	within coordinates
Rr398088	regulatory region 398088	1208 bp upstream
Rr586457	regulatory region 586457	61 bp proximal
Rr586458	regulatory region 586458	1438 bp proximal
Rr586459	regulatory region 586459	1939 bp proximal
Tssr32216	transcription start site region 32216	489 bp downstream
Tssr32217	transcription start site region 32217	451 bp downstream
Tssr32218	transcription start site region 32218	397 bp downstream
Tssr32219	transcription start site region 32219	360 bp downstream
Tssr32220	transcription start site region 32220	346 bp downstream
Tssr32221	transcription start site region 32221	328 bp downstream
Tssr32222	transcription start site region 32222	272 bp downstream
Tssr32223	transcription start site region 32223	215 bp downstream
Tssr32224	transcription start site region 32224	161 bp downstream
Tssr32225	transcription start site region 32225	160 bp upstream
Tssr32226	transcription start site region 32226	208 bp upstream
Tssr32227	transcription start site region 32227	1922 bp upstream
Tssr32228	transcription start site region 32228	1973 bp upstream
Tssr35947	transcription start site region 35947	501 bp downstream