rs31068604 SNP Detail

Summary

• ID
  rs31068604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142324432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTA TAAACATGAT AAAAATCTGA
  R
  CATATCCATG GAACACAGCT CCTAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss47012991	NES10856776	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	G	A		A		G
ss136016041	ENSMUSSNP6088933	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss321003275	CHEV_3_142281635	CHEVERUD	SCREENING_POP	f	SNP											G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs31068604					SNP	A	G	A	A	A	A	A	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47012991	NES10856776	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142324432 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	1992 bp upstream
Gbp2b	guanylate binding protein 2b	mRNA-UTR
Gm54185	predicted gene, 54185	within coordinates
Rr398088	regulatory region 398088	1211 bp upstream
Rr586457	regulatory region 586457	64 bp proximal
Rr586458	regulatory region 586458	1441 bp proximal
Rr586459	regulatory region 586459	1942 bp proximal
Tssr32216	transcription start site region 32216	486 bp downstream
Tssr32217	transcription start site region 32217	448 bp downstream
Tssr32218	transcription start site region 32218	394 bp downstream
Tssr32219	transcription start site region 32219	357 bp downstream
Tssr32220	transcription start site region 32220	343 bp downstream
Tssr32221	transcription start site region 32221	325 bp downstream
Tssr32222	transcription start site region 32222	269 bp downstream
Tssr32223	transcription start site region 32223	212 bp downstream
Tssr32224	transcription start site region 32224	158 bp downstream
Tssr32225	transcription start site region 32225	163 bp upstream
Tssr32226	transcription start site region 32226	211 bp upstream
Tssr32227	transcription start site region 32227	1925 bp upstream
Tssr32228	transcription start site region 32228	1976 bp upstream
Tssr35947	transcription start site region 35947	504 bp downstream