rs31064136 SNP Detail

Summary

• ID
  rs31064136
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142326762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAA GACTTCACAC TGAGAGCATA
  W
  GTGTGTTGAG GTTCATATTG CTTTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47013027	NES10856633	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	T	T	T	A	T	T	A	T
ss136016152	ENSMUSSNP3725267	ENSEMBL	ENSEMBL_Sanger	f	SNP	T						T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31064136					SNP	T	A	A	A	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47013027	NES10856633	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142326762 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	Intron
Gbp2b	guanylate binding protein 2b	1822 bp downstream
Gm54185	predicted gene, 54185	1719 bp upstream
Rr398088	regulatory region 398088	818 bp downstream
Rr586458	regulatory region 586458	389 bp distal
Rr586459	regulatory region 586459	within coordinates
Tssr32227	transcription start site region 32227	374 bp downstream
Tssr32228	transcription start site region 32228	336 bp downstream
Tssr32229	transcription start site region 32229	297 bp downstream
Tssr32230	transcription start site region 32230	268 bp downstream
Tssr32231	transcription start site region 32231	251 bp downstream
Tssr32232	transcription start site region 32232	272 bp upstream
Tssr35947	transcription start site region 35947	1820 bp upstream