rs31059526 SNP Detail

Summary

• ID
  rs31059526
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120680674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATGAAAC ATTTTGAAGT
  GAGGAAGACA CCACTATTTC CCAAAGAATG TCCCTTGTGT GTCTCAGTCG GATTGAGGAC
  CTCTGCCAAA GGACAAGAAT AAGACTTTCT GGAAACTTAG TGCGAACATA GATGATATCT
  AACTTTGATA TATCACAGGT CAGCATTATA GCCAGAATAG ATCTTACTAA TTTAAATTAA
  Y
  GAAAAAAGAA TGTGCAATAT TTCTCATACT CCCTAGTTAT GAAGCACCAC CCACCACCCC
  TCCACCCCGC AAAAACACAG TTTACTCGTC TTAATGAGGA GTGGCCAAAT AGATGGTTTG
  CAATATTTTT ATTTGTGGAA GATTGTTTCT GCCAATGAGC AGCACTGGCT GGAACAATGG
  CAGCAATTTG GGGTATTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45494981	mCV24002931	ABI	CRAMUS_MOUSE	f	SNP	C	T						T
ss51608882	NES14656094	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	C	T	T	T	T	T	T	T	C
ss135709344	ENSMUSSNP4940565	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31059526					SNP	C	T	T	T	T	T	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51608882	NES14656094	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120680674 () rs orientation: forward

Symbol	Name	Function Class
6530403H02Rik	RIKEN cDNA 6530403H02 gene	within coordinates
Rr583992	regulatory region 583992	464 bp distal
Rr583993	regulatory region 583993	37 bp distal
Tssr35394	transcription start site region 35394	279 bp upstream