rs31053023 SNP Detail

Summary

• ID
  rs31053023
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90420283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATG ACTGCCTGTT CTAGTCCTTT
  Y
  CTCTGCAAAA TCATCCCTTT CCATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45494355	mCV23476207	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss135476767	ENSMUSSNP5747279	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss320837933	CHEV_3_90316898	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31053023					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90420283 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13466	CpG island 13466	1208 bp proximal
Gm56783	predicted gene, 56783	1274 bp downstream
Rr375350	regulatory region 375350	within coordinates
Rr580384	regulatory region 580384	86 bp proximal
Rr580385	regulatory region 580385	985 bp proximal
Rr580386	regulatory region 580386	1102 bp proximal
Rr580387	regulatory region 580387	1292 bp proximal
Rr580388	regulatory region 580388	1402 bp proximal
Rr580389	regulatory region 580389	1406 bp proximal
Rr580390	regulatory region 580390	1470 bp proximal
S100a1	S100 calcium binding protein A1	Intron
S100a13	S100 calcium binding protein A13	1376 bp upstream
Tssr30209	transcription start site region 30209	1942 bp upstream
Tssr34240	transcription start site region 34240	1802 bp upstream
Tssr34241	transcription start site region 34241	910 bp upstream
Tssr34242	transcription start site region 34242	1274 bp downstream
Tssr34243	transcription start site region 34243	1380 bp downstream
Tssr34244	transcription start site region 34244	1394 bp downstream
Tssr34245	transcription start site region 34245	1429 bp downstream