rs31047207 SNP Detail

Summary

• ID
  rs31047207
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123180006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGCAATAC TGACCGGCTT GTGAAGGACT GGATCGCCGC
  TCAGTAACCT TGGCAAGTTA GCGAGCTTTT GTAAAAGAAC AGAGAAAGAG GGTCTTGGGG
  R
  GCTGAGGCAG GAGGACCCAG GAGTTTGGAG CCTAGGCTAT GTAATGAAAC CCTGTCATTC
  ACTCATTTAT TTATATAAAT AAATAAATAA ATAAATAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45492766	mCV23482664	ABI	CRAMUS_MOUSE	f	SNP		A	G	A
ss135764380	ENSMUSSNP4356046	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss320919497	CHEV_3_123089275	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31047207					SNP	G	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123180006 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	289 bp distal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	367 bp upstream
Rr397990	regulatory region 397990	304 bp downstream
Rr584510	regulatory region 584510	437 bp distal
Rr584511	regulatory region 584511	within coordinates
Tssr35499	transcription start site region 35499	685 bp upstream
Tssr35500	transcription start site region 35500	364 bp upstream
Tssr35501	transcription start site region 35501	347 bp upstream