rs31043438 SNP Detail

Summary

• ID
  rs31043438
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116456015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCGGGCGC ACGTGGGCCG
  AGGCCGCAGG CTCCGAGACG CAGTGCCCCG CCGGAGGTAC CAGCAGCGTC CAGGGGAGCC
  AGGCCGCGGA GGCCGCAGGC CGAGACCGCG GCAGCGCCGG CGGCACGGAA GGGCAGGGCG
  CTCTCGGCCC AGCGAAGGCG GAAGCGGGGG GAAGAGCGAG CCGGGCCCGC ACCCGGGCCG
  Y
  CCTGCGGCGC GGAACCAGCA GCACTCACCG TGCCTCCGTC CTTAATGATG ATCTTTTTGG
  CCAGCATGAT ACTGCGGTTC GCGGCCCGTT TCTTTTTCTT CCCCTGGGTC ATTTTACCAT
  CCTCGACTCC CGGCGCTGCA GCAGCCACTC AGGGGGCGGG CGGCCCCAGC GGCGAGTGCG
  GTCCCGCCAC TACTGCCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45491876	mCV23499241	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31043438					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116456015 () rs orientation: forward

Symbol	Name	Function Class
4930512P04Rik	RIKEN cDNA 4930512P04 gene	1366 bp upstream
Cpgi13738	CpG island 13738	within coordinates
Gm43191	predicted gene 43191	Intron
Mfsd14a	major facilitator superfamily domain containing 14A	Intron
Rr375625	regulatory region 375625	1664 bp upstream
Rr397966	regulatory region 397966	134 bp upstream
Rr583758	regulatory region 583758	within coordinates
Rr583759	regulatory region 583759	301 bp proximal
Tssr31364	transcription start site region 31364	591 bp downstream
Tssr35324	transcription start site region 35324	262 bp upstream
Tssr35325	transcription start site region 35325	27 bp upstream
Tssr35326	transcription start site region 35326	171 bp downstream
Tssr35327	transcription start site region 35327	188 bp downstream
Tssr35328	transcription start site region 35328	205 bp downstream
Tssr35329	transcription start site region 35329	224 bp downstream
Tssr35330	transcription start site region 35330	277 bp downstream