rs31022734 SNP Detail

Summary

• ID
  rs31022734
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:151946853 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCTCG GCTAAACGGT TCGGGAACGC
  Y
  GTGAACCGGC ACGCCTCGGT GCCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46470351	mCV25389770	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss148077965	ENSMUSSNP3403680	ENSEMBL	ENSEMBL_Sanger	r	SNP		G	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31022734					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151946853 () rs orientation: reverse

Symbol	Name	Function Class
9230110K08Rik	RIKEN cDNA 9230110K08 gene	within coordinates
Camta1	calmodulin binding transcription activator 1	628 bp upstream
Cpgi15375	CpG island 15375	within coordinates
Gm42357	predicted gene, 42357	within coordinates
Gm57065	predicted gene, 57065	within coordinates
Rr398891	regulatory region 398891	364 bp downstream
Rr605651	regulatory region 605651	661 bp distal
Rr605652	regulatory region 605652	1224 bp distal
Rr605653	regulatory region 605653	156 bp distal
Rr605654	regulatory region 605654	590 bp distal
Rr605655	regulatory region 605655	within coordinates
Tssr40478	transcription start site region 40478	177 bp downstream
Tssr40479	transcription start site region 40479	141 bp downstream
Tssr40480	transcription start site region 40480	252 bp upstream
Tssr44794	transcription start site region 44794	717 bp upstream
Tssr44795	transcription start site region 44795	635 bp upstream
Tssr44796	transcription start site region 44796	623 bp upstream