rs31019194 SNP Detail

Summary

• ID
  rs31019194
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:64870706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGATATAA CCCATATTTT GCATGGTCTA TGTGGCTAAC
  TCTTAACAAA GAAGACTAAG AGTTGGTGAC TCTAAAGGTG TCTGGCAAGA ACCCTTCACC
  S
  AGTACCTGAG CCCTAAGTAC CCTGCTCTGC TCAATTAAGA TTCCATCAGG TATTGAGGGG
  AGTACCATCC TCCCTGGCAA AAGTGAATTG AGGTTAGAA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45490267	mCV23288015	ABI	CRAMUS_MOUSE	f	SNP		C	G					G		C
ss51536690	NES14687982	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	G	G		G	C	C	G	G		G	G	C
ss135246309	ENSMUSSNP5562763	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G							C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31019194					SNP	C	C	G	G	G	G	G	G	G	C	C	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51536690	NES14687982	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:64870706 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm54196	predicted gene, 54196			within coordinates
Kcnab1	potassium voltage-gated channel, shaker-related subfamily, beta member 1			Intron
				Noncoding-Transcript-Variant
Rr577647	regulatory region 577647			1176 bp proximal