rs31009471 SNP Detail

Summary

• ID
  rs31009471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:156268631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGA TTTCCCTTTC CACTAATTTC
  Y
  GGTCCTCACC ATAGCCCTTG TCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45489776	mCV22727429	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss321033464	CHEV_3_156225958	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31009471					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:156268631 () rs orientation: forward

Symbol	Name	Function Class
4930570G19Rik	RIKEN cDNA 4930570G19 gene	1248 bp upstream
Cpgi13974	CpG island 13974	360 bp distal
Negr1	neuronal growth regulator 1	Intron
Rr587959	regulatory region 587959	1352 bp distal
Rr587960	regulatory region 587960	1015 bp distal
Rr587961	regulatory region 587961	within coordinates
Rr587962	regulatory region 587962	868 bp distal
Tssr32476	transcription start site region 32476	1125 bp downstream
Tssr32477	transcription start site region 32477	1001 bp downstream
Tssr32478	transcription start site region 32478	861 bp downstream
Tssr32479	transcription start site region 32479	798 bp downstream
Tssr32480	transcription start site region 32480	304 bp downstream
Tssr32481	transcription start site region 32481	198 bp downstream
Tssr36286	transcription start site region 36286	1219 bp upstream