rs31007119 SNP Detail

Summary

• ID
  rs31007119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121078339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTGTATAA ACAGCATTTT TAGTTACCCT GCTCCTGGTG
  AGGGTGCTGG TTATTATTCT GGACCTTCTT TCTTCAGCTC TTCCACTTGG TAAAGACTGC
  Y
  CTTTCTTCAG TCTCTTATCC ACAGACTTCT GTGTGTCTGT ATGCCCATCC CAGCCCCCCT
  GACTGGTTAA CAGGTAAGGC TCACCTCTCC TCCAAATGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45489915	mCV23993563	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
ss135717534	ENSMUSSNP6080692	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31007119					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121078339 () rs orientation: forward

Symbol	Name	Function Class
Rr584034	regulatory region 584034	604 bp proximal
Rr584035	regulatory region 584035	1788 bp proximal
Tlcd4	TLC domain containing 4	1583 bp upstream
Tssr35409	transcription start site region 35409	1660 bp upstream
Tssr35410	transcription start site region 35410	1632 bp upstream
Tssr35411	transcription start site region 35411	1587 bp upstream