rs31003853 SNP Detail

Summary

• ID
  rs31003853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108806985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCCAAGTT CCTCCTCCCT GAAGGGTGTG CGTTGCCACA
  GACCAAGTCA GGCTGGTTGG TGACTGTCGT GTTTCCCTCT CCTTAGATGG GAGTGGAGTT
  R
  TTAGGTTGTT TGTTGTCTTG GCATTCTACA TGGACACCCT TGGACATCTG GCATGTGCAT
  TTCCCTTTAC CTTATGGAAG CCAGGAAGGA TTCTTAGTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss45986960	mCV24063480	ABI	CRAMUS_MOUSE	f	SNP		A				A		G
ss51809006	NES14771362	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A		G	G	A	A	G	A	G	G
ss133510109	ENSMUSSNP3524466	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31003853					SNP	A	A	A	A	A	A	G	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51809006	NES14771362	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108806985 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9430088B20Rik	RIKEN cDNA 9430088B20 gene			1822 bp upstream
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Gm35417	predicted gene, 35417			1748 bp upstream
Rr399823	regulatory region 399823			1387 bp downstream
Rr636213	regulatory region 636213			1681 bp distal
Rr636214	regulatory region 636214			1340 bp distal
Rr636215	regulatory region 636215			854 bp distal
Rr636216	regulatory region 636216			1746 bp proximal
Tssr58099	transcription start site region 58099			1507 bp downstream
Tssr58100	transcription start site region 58100			1482 bp downstream
Tssr58101	transcription start site region 58101			1466 bp downstream
Tssr58102	transcription start site region 58102			1459 bp downstream
Tssr58103	transcription start site region 58103			1420 bp downstream
Tssr58104	transcription start site region 58104			1408 bp downstream
Tssr58105	transcription start site region 58105			1303 bp downstream
Tssr58106	transcription start site region 58106			1280 bp downstream
Tssr58107	transcription start site region 58107			880 bp downstream
Tssr62395	transcription start site region 62395			1640 bp upstream