rs30998491 SNP Detail

Summary

• ID
  rs30998491
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87821391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA AAGAGTTGTG CGGCAGAGCC
  Y
  GAGGTGGAGC CCGAAGCCCA TGAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45489393	mCV23484535	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss135468747	ENSMUSSNP3028366	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss320835495	CHEV_3_87718006	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30998491					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87821391 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hdgf	heparin binding growth factor			Coding-Synonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr375307	regulatory region 375307			1622 bp downstream
Tssr29850	transcription start site region 29850			834 bp upstream
Tssr29851	transcription start site region 29851			972 bp upstream
Tssr29852	transcription start site region 29852			997 bp upstream
Tssr29853	transcription start site region 29853			1077 bp upstream
Tssr29854	transcription start site region 29854			1192 bp upstream
Tssr29855	transcription start site region 29855			1400 bp upstream
Tssr29856	transcription start site region 29856			1453 bp upstream
Tssr29857	transcription start site region 29857			1476 bp upstream
Tssr29858	transcription start site region 29858			1494 bp upstream
Tssr29859	transcription start site region 29859			1528 bp upstream
Tssr29860	transcription start site region 29860			1666 bp upstream
Tssr29861	transcription start site region 29861			1705 bp upstream