rs30998215 SNP Detail

Summary

• ID
  rs30998215
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108806652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTAGAAAG GGGCCATCTA GTGAGTTGGA CGCCCGGATT
  GGGATGAGGC GTTAAGTGTT TCTCCTTTCC AGGGGCCGCA GCCTAGACTG AGGGGAGCTT
  R
  TTGGCAGGAA TGGTAGTTGC CTGGCCCAGA TTGGCGATCT GGATACTTGA AGGATGATTT
  CTTAGGCGCA GAGTTGACTG ACACCGTCAT TGCTTGGTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45986297	mCV24063471	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss133510100	ENSMUSSNP7072652	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs30998215					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108806652 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17816	CpG island 17816			50 bp distal
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Gm35417	predicted gene, 35417			1415 bp upstream
Rr399822	regulatory region 399822			1907 bp downstream
Rr399823	regulatory region 399823			1054 bp downstream
Rr636213	regulatory region 636213			1348 bp distal
Rr636214	regulatory region 636214			1007 bp distal
Rr636215	regulatory region 636215			521 bp distal
Tssr58099	transcription start site region 58099			1174 bp downstream
Tssr58100	transcription start site region 58100			1149 bp downstream
Tssr58101	transcription start site region 58101			1133 bp downstream
Tssr58102	transcription start site region 58102			1126 bp downstream
Tssr58103	transcription start site region 58103			1087 bp downstream
Tssr58104	transcription start site region 58104			1075 bp downstream
Tssr58105	transcription start site region 58105			970 bp downstream
Tssr58106	transcription start site region 58106			947 bp downstream
Tssr58107	transcription start site region 58107			547 bp downstream
Tssr62395	transcription start site region 62395			1307 bp upstream