rs30997871 SNP Detail

Summary

• ID
  rs30997871
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138445992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTA TGGTGCAGGA GGAGGAAAAC
  R
  TCATACTATG GCATTTCTGT TATAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45488193	mCV25331754	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss135956709	ENSMUSSNP1679083	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
ss320981108	CHEV_3_138403195	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30997871					SNP	A	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138445992 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13879	CpG island 13879	1483 bp proximal
Rr586188	regulatory region 586188	1474 bp proximal
Rr586189	regulatory region 586189	1975 bp proximal
Tspan5	tetraspanin 5	1617 bp upstream
Tssr32003	transcription start site region 32003	1997 bp upstream