rs30963301 SNP Detail

Summary

• ID
  rs30963301
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:95310030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAGGCAATT TGGAGTTCTC TGGGCCACCA TTTCTTCATT
  CAGAATATAT GTTTAATGGC TGGTTGTAGA ACTTAAAATT CAAGTAAGTA TTTTTAAGCA
  R
  CCACCATGCA CCAGAGACTC TTGTGAACAC TGGTAGGAGA ACAATAATTG AAACAAAGCC
  TGTATTTATG TGGCATATTT GAAGTGACAT CGTGTCAAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45983255	mCV24632229	ABI	CRAMUS_MOUSE	f	SNP		A	A					A	G
ss48016892	NES11894365	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		G	A	A	A	A	A	A	A
ss133407706	ENSMUSSNP3541007	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30963301					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48016892	NES11894365	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:95310030 () rs orientation: forward

Symbol	Name	Function Class
AY512915	cDNA sequence AY512915	within coordinates
Gm53325	predicted gene, 53325	1644 bp downstream
Rr635005	regulatory region 635005	1476 bp distal
Rr635006	regulatory region 635006	1771 bp proximal
Tssr62186	transcription start site region 62186	943 bp downstream