rs30960452 SNP Detail

Summary

• ID
  rs30960452
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138612162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGCAGAA TCTATTACAG
  TGTGGCTTTT AAGACATTCT TGGTTTTCGG AATTAATTGG TTCCCTCTGG AGGCCTGCAG
  CTTCCTTTGT CCCAAGGTTG AGCCATCCCC TCCCAGTTAG ACCGAGCTAG ACACCCTGGT
  CCTTCATCTC CACTTCTAGA AACAAGGGCT AAAGTAAATG TACTTTAAAA GTCAGAGAGC
  R
  GGTGGAGACA TAGTTTTACA AGGTATGCAT GAGTTCCACA AAGAACCAGT GTCCAGCAAA
  ACAAACGACC CATGTGGTCC TCACCTCCAA GAACTTCTGG GCCGATTAGG ACAGGAAAGT
  TTTAGTGGCC TGCCCTCTAG TGTCAGCCAC GGAGAACCAC AGCTGGCTGG TGTTGGAAGG
  GAGGTTCCTT GCGGATGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47001616	NES10874083	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30960452					SNP	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001616	NES10874083	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138612162 () rs orientation: forward

Symbol	Name	Function Class
Rr586228	regulatory region 586228	302 bp distal
Rr586229	regulatory region 586229	within coordinates
Rr586230	regulatory region 586230	123 bp distal
Rr586231	regulatory region 586231	127 bp proximal
Rr586232	regulatory region 586232	593 bp proximal
Tspan5	tetraspanin 5	mRNA-UTR