rs30960446 SNP Detail

Summary

• ID
  rs30960446
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138611729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGGAGAA GAGCCCTGGG
  AAGCCAGTGG GCGAACAATG GGGGTCGGAG CCCAGTGACC TGGCAGGCCT TCCCCAGCAA
  GCTTTGCCAT TTATACATTG GTGCTTGCTC CTTCTCTTGG GAAATCTGTG CAGACCTCCA
  AGGAAGGACT GGGAACTTCT CCATAAACTC TGGCTACTGT GGCCAGGAAG CTGGAGCAGG
  R
  AACGGTAATT GTGAGACACT GTCAGCAAGT GGAGACTAAT GTACAGCAAA TGTAGCTGTA
  GGCAGGGCTG AGTTGTGACT TAGAGTGGAA ACATGACTAG GGGCACAGTT ATCAGATGTT
  TGGATCCAGG AAGCAGGGGA CAGAAACTAA ACTCTAAAGA TACCAAAACC ATCTTAATGT
  TCCCCTAGCC TTTAATTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47001610	NES10874080	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30960446					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001610	NES10874080	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138611729 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13880	CpG island 13880	1756 bp distal
Rr586228	regulatory region 586228	within coordinates
Rr586229	regulatory region 586229	259 bp proximal
Rr586230	regulatory region 586230	289 bp proximal
Rr586231	regulatory region 586231	560 bp proximal
Rr586232	regulatory region 586232	1026 bp proximal
Tspan5	tetraspanin 5	mRNA-UTR