rs30959704 SNP Detail

Summary

• ID
  rs30959704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138611083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATAGCACT TTTAAGACCA
  GGCAGGACAG TGTGTCCTAA GACTTGAGAA AGGCCTCAAG AAAAGCAGAT ACAGAAAGCA
  GACCTATTTT GATTTTAAAG AAACTTGTCG GGGACTGAAG ATGGGCAAGC CCTGTTGATG
  TCTCTTTACC TGATGCTGTG GGGCCTGGTT ATTCCCTCCA TGCTGTGGCC AGCAGCAGAG
  Y
  GGTTATAGTT ACAATGGTGC TTTGTTTACA AGGCTCAAAA CTAGCAGAAG TTTTGTCCTT
  GCAAAGACCA TGGACTTTGG GGAAAATTAC CATTTTTAAA AAAAATTTCT ATTGTTTACT
  GGTTCCCACA AAGATTGCTT CTGTAATATA TACTTAAAAA TTACTATTCA TAAAAAAGAA
  CAGTAAAAAC CAGAACTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47001598	NES10874074	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30959704					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001598	NES10874074	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138611083 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13880	CpG island 13880	1110 bp distal
Rr586228	regulatory region 586228	279 bp proximal
Rr586229	regulatory region 586229	905 bp proximal
Rr586230	regulatory region 586230	935 bp proximal
Rr586231	regulatory region 586231	1206 bp proximal
Rr586232	regulatory region 586232	1672 bp proximal
Tspan5	tetraspanin 5	mRNA-UTR