rs30959062 SNP Detail

Summary

• ID
  rs30959062
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138610851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAG TGTTACTGAA GGATACTTTT
  W
  AAGAACAAAT GTAAGGAAAA GCTTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45531353	mCV23601317	ABI	CRAMUS_MOUSE	f	SNP		A	T				T
ss47001596	NES10874073	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T		T	T	T		T	A	T		T
ss135958128	ENSMUSSNP2521276	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
ss320981857	CHEV_3_138568054	CHEVERUD	SCREENING_POP	f	SNP											A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30959062					SNP	A	A	T	T	T	T	T	T	T	T	A	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001596	NES10874073	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138610851 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13880	CpG island 13880	878 bp distal
Rr586228	regulatory region 586228	511 bp proximal
Rr586229	regulatory region 586229	1137 bp proximal
Rr586230	regulatory region 586230	1167 bp proximal
Rr586231	regulatory region 586231	1438 bp proximal
Rr586232	regulatory region 586232	1904 bp proximal
Tspan5	tetraspanin 5	mRNA-UTR
Tssr32018	transcription start site region 32018	1976 bp downstream
Tssr32019	transcription start site region 32019	1926 bp downstream
Tssr32020	transcription start site region 32020	1903 bp downstream
Tssr32021	transcription start site region 32021	1825 bp downstream