rs30959060 SNP Detail

Summary

• ID
  rs30959060
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138610416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATCATTTC TCAGATGTAA
  GTTACTGTAA AACACTCTGG AATGTCTCCT TAAAACACAA AGGGCCGGGG CCAGGGGGAC
  AGCTCATGTA CAGTGTGCTT GAAACTTAGG GTTCAATCCC ATGGCCCTGA AACCACCATC
  ATTTCCAGAA CTCCTACGGA GGTGGGTCAG GATGCAGCTT GAGGACTTGC ACTGGTGAAC
  K
  CCTAAGATGC TGATGAGACT ACACATTGAT TTTTAGAAAC ACCAATCAGT CCCGGAAGGG
  AGGGGAAATT TGTGGATGTA AGGGGCTAAG CCTCTGAGTT GCTAAACGTG GGCAGACACA
  GCAAGTAGGT GTTCTCTGTC TCAAGGACTG TCCTCTATTT GTTTCAGATG CCTTGGGAAC
  ATTACAAAAC ACAGATCCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47001594	NES10874072	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30959060					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001594	NES10874072	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138610416 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13880	CpG island 13880	443 bp distal
Rr586228	regulatory region 586228	946 bp proximal
Rr586229	regulatory region 586229	1572 bp proximal
Rr586230	regulatory region 586230	1602 bp proximal
Rr586231	regulatory region 586231	1873 bp proximal
Tspan5	tetraspanin 5	mRNA-UTR
Tssr32017	transcription start site region 32017	1643 bp downstream
Tssr32018	transcription start site region 32018	1541 bp downstream
Tssr32019	transcription start site region 32019	1491 bp downstream
Tssr32020	transcription start site region 32020	1468 bp downstream
Tssr32021	transcription start site region 32021	1390 bp downstream