rs30959058 SNP Detail

Summary

• ID
  rs30959058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138610231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGATTCAG AATCAGACAG
  GATCCCCACC CCGTGGCACA TCCAGTGAAA GCCAAAACAC AAGCCCAAGC GAGTTTTAAA
  TTTTAATCAC CCTTTATTTT TTACACTCGA GAGTGATTGT AATAAAAGCT GTCATTAATA
  AACTCGGTTC TACCTTACAT GGGATCACGT CGTCTTACTT TTTCTGAATC ATTTCTCAGA
  Y
  GTAAGTTACT GTAAAACACT CTGGAATGTC TCCTTAAAAC ACAAAGGGCC GGGGCCAGGG
  GGACAGCTCA TGTACAGTGT GCTTGAAACT TAGGGTTCAA TCCCATGGCC CTGAAACCAC
  CATCATTTCC AGAACTCCTA CGGAGGTGGG TCAGGATGCA GCTTGAGGAC TTGCACTGGT
  GAACTCCTAA GATGCTGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47001592	NES10874071	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30959058					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001592	NES10874071	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138610231 () rs orientation: forward

Symbol	Name	Function Class
Rr586228	regulatory region 586228	1131 bp proximal
Rr586229	regulatory region 586229	1757 bp proximal
Rr586230	regulatory region 586230	1787 bp proximal
Tspan5	tetraspanin 5	mRNA-UTR
Tssr32016	transcription start site region 32016	1985 bp downstream
Tssr32017	transcription start site region 32017	1458 bp downstream
Tssr32018	transcription start site region 32018	1356 bp downstream
Tssr32019	transcription start site region 32019	1306 bp downstream
Tssr32020	transcription start site region 32020	1283 bp downstream
Tssr32021	transcription start site region 32021	1205 bp downstream