rs30957948 SNP Detail

Summary

• ID
  rs30957948
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138604293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAATTTA ACCATCGTGG
  CTGGTATTTT CATAGGCATT GCATTGCTAC AGGTAAGATG TGGGTCCTCC GTGCTAGCTC
  AGACGGTGGT GCCCAGAAAG ACCTCCCCAG TCCAAGATCT TTGCTTTGTC TCCTCGATGC
  CTTAGCTTCT GAGACACACT GTAGGTCCTA GAATCAGACT GGAACTATTG GGTTTGTGTT
  W
  ATTGAAGGCC TGAGTCTAGA GACAGAAATA CCTTAGGAAG TCTTGCCTCC TTTCACCACA
  GCGGTGTTGA TGGGTCCCAG GTTGTTATCT GGCATCCCAT TGTTTCAAGG ATTCTTAAAG
  GATTGTGTTG TGACACTTGG GGCAGACAAG GCTGCTCAGA GTGGGGACCC CAGCAGCAAG
  GCCAAGCTCT GTGGAGTTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47001570	NES10874265	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30957948					SNP	T	T	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001570	NES10874265	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138604293 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586227	regulatory region 586227			846 bp distal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant