rs30957946 SNP Detail

Summary

• ID
  rs30957946
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138604162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGAGGAG CGTTTGCGCA
  TGCGTAAGGC TGTATCTATG ACATTCTGCT CTCTTCCCTT GTAAAGGAAG TTGACCAACA
  GATTGTAATC TACACAAAAG GCTGTGTGCC CCAGTTTGAG AAGTGGCTAC AGGACAATTT
  AACCATCGTG GCTGGTATTT TCATAGGCAT TGCATTGCTA CAGGTAAGAT GTGGGTCCTC
  S
  GTGCTAGCTC AGACGGTGGT GCCCAGAAAG ACCTCCCCAG TCCAAGATCT TTGCTTTGTC
  TCCTCGATGC CTTAGCTTCT GAGACACACT GTAGGTCCTA GAATCAGACT GGAACTATTG
  GGTTTGTGTT TATTGAAGGC CTGAGTCTAG AGACAGAAAT ACCTTAGGAA GTCTTGCCTC
  CTTTCACCAC AGCGGTGTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47001568	NES10874264	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30957946					SNP	C	C	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001568	NES10874264	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138604162 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586227	regulatory region 586227			715 bp distal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant