rs30957421 SNP Detail

Summary

• ID
  rs30957421
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138603628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCC TCCTCTGAGG CGGCTCAAGC
  K
  GCAGCAGGAT ATCCAGCCTG GAAGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss45544359	mCV23601328	ABI	CRAMUS_MOUSE	f	SNP	G	T		T	T
ss47001562	NES10874276	PERLEGEN	MM_PANEL2	f	SNP		T	T				G	G		T
ss135958107	ENSMUSSNP4625294	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T			T
ss320981849	CHEV_3_138560831	CHEVERUD	SCREENING_POP	f	SNP						G			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs30957421					SNP	G	T	T	T	T	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001562	NES10874276	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138603628 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586227	regulatory region 586227			181 bp distal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant