rs30957417 SNP Detail

Summary

• ID
  rs30957417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138602216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATAGAGA GGTGGGTCTG
  CCTCATCCGT GTTTGACCAC TGTAGCAATG GACATCAGCC CTGACGTTCA CTGTCCTGTG
  AAGTGGCTAC TGTTCTACTG TGTTACCCAC AGACCAGACC TCATCAAAGT GTCTACTGTT
  TACCTGATGC CACTTAAACA CAGTGAAACT GTTTACGAAC CATTAAAATA AGATCAAAAC
  Y
  TAAGCACAAC CACAGTTGCC TCGTTATACG TTACCGTTGT TGCTAGTGTC TTGTTTTTCC
  TTCTAGAATG TTCTGGTTTA TCCTAGAACG TGACCGAGCC AAATTTATCG TGAGCCCTGC
  TGTACAATGT CCCATGCCAA ACCATCTCTA GGAACCTTCA GCCTACATCC CTTTGGAAGG
  CTTTCCAGGG CCCGTTTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47001558	NES10874372	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30957417					SNP	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001558	NES10874372	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138602216 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm65746	predicted gene, 65746			896 bp upstream
Rr586227	regulatory region 586227			1210 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant