rs30956813 SNP Detail

Summary

• ID
  rs30956813
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138601503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGGTGGT GTGAAATTGA
  GCCCTGTCTC ACGTGCTCAG GCGATTTCCC TGTGCTGTTA GGTCATAATG GATGCAAGCT
  CTCAGCTTCC CGGGTATTCT CCCTGACTAG CTGGCATGAC AGAGCCGGCG AGGCTTTACA
  GGAAACCTGT GGTGTCCAGC CCAAGCCCAG AGGAGCAGCT GAGCCTCCAG AACCTGTGTT
  Y
  GCACGCGTTC CTAAGAGCTG CCTGCTCTAC TTAGCAGCAC TGCTCTTTCA TGTGATTCTG
  GTCTTCTGTT CTGGAGTTAA AAACATTTTG ATGTAGCTGT TGGTCCTGAA AGCCTTAAAA
  TGGCCACAAA TTGGTTTTAT TTAACTTAAG AAGCCAAGAT GATCCAGTAC AGAAGGAGGC
  CATAGTCAGT CCCCATTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47001554	NES10874513	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30956813					SNP	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001554	NES10874513	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138601503 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm65746	predicted gene, 65746			183 bp upstream
Rr586226	regulatory region 586226			1724 bp distal
Rr586227	regulatory region 586227			1923 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant