rs30956811 SNP Detail

Summary

• ID
  rs30956811
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138601428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTG ACTAGCTGGC ATGACAGAGC
  Y
  GGCGAGGCTT TACAGGAAAC CTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss47001552	NES10874512	PERLEGEN	MM_PANEL2	f	SNP		C	C	C		T	T		C
ss135958083	ENSMUSSNP6125269	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320981832	CHEV_3_138558631	CHEVERUD	SCREENING_POP	f	SNP					T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs30956811					SNP	T	C	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001552	NES10874512	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138601428 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm65746	predicted gene, 65746			108 bp upstream
Rr586226	regulatory region 586226			1649 bp distal
Rr586227	regulatory region 586227			1998 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant