rs30956348 SNP Detail

Summary

• ID
  rs30956348
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138557629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGCGCTG GTCCTGACCT
  ATTAAAGGGA CAGCAGGGGG GTTGTGACCT GCTATTTGAA AAAGAGTGGT CCAGAGGCTC
  TCCATCCTCG GTTCTCAGCA TCCTCTGCCC TCCGTGGAGA CTTGGCCCCT TCATGAAACC
  CTCCCTCCTC TCAGCATCTG GTGCCTCCTC TGACCTTATC ACTTTTCTCA ATCTCATTTA
  Y
  AGCATTTACT GCAAATTGGC TCTTATGCTA ATTACTGATT TACAACTTAT CTCAGTGGCT
  TGATGGTGAG TGCCTGGTCA GGGCATGAGC TCCGTGCTGA CCTCATCCAT CAACACACAC
  ACACACACAC ACACACACAC GCGCGCGCGC GCCCCAGAGT GTCCTGGCCA CCTGAGCCCT
  TGCAAAGTGT GCAGTGCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47001022	NES10875939	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30956348					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001022	NES10875939	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138557629 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586211	regulatory region 586211			1402 bp distal
Rr586212	regulatory region 586212			within coordinates
Rr586213	regulatory region 586213			1248 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant