rs30955765 SNP Detail

Summary

• ID
  rs30955765
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138565818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGG GGCCACAATT AGATGGCCTT
  R
  TGACTATGTA AAGGGAGAGA CATTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss45522988	mCV23602304	ABI	CRAMUS_MOUSE	f	SNP		A	G				G
ss47001122	NES10875552	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G		G	G	G		G	G		G
ss135957738	ENSMUSSNP6385502	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss320981679	CHEV_3_138523021	CHEVERUD	SCREENING_POP	f	SNP											A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs30955765					SNP	A	A	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001122	NES10875552	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138565818 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm65713	predicted gene, 65713			within coordinates
Rr586216	regulatory region 586216			1389 bp distal
Rr586217	regulatory region 586217			within coordinates
Rr586218	regulatory region 586218			419 bp proximal
Rr586219	regulatory region 586219			447 bp proximal
Rr586220	regulatory region 586220			913 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant
Tssr1062	transcription start site region 1062			460 bp upstream
Tssr32014	transcription start site region 32014			432 bp upstream