rs30955443 SNP Detail

Summary

• ID
  rs30955443
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138557235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGTTGT TGGATCAGTC
  TCGCTGTCGT GGATGTAGTC AGTACTACCT TGAAGGATGG AGCTTGCAAT TAAGCAGAAG
  CAGCCCAGGG GTGAACCGCT AAGCACTGCA GGTGTCAATG AAGCATAGGG TGGAAGAGAT
  GAAAAGCTAA AAGCCCCCCC ATGACCTCTT TGCACACCGA TTATCCAATC TGAAGTCATT
  S
  GTGCCATTTT GCACATAAGG GCCGGGATTG CCCTTATGAC CACGTCCTTT TCTAGCTAGC
  TAGGTAACTT CCCTTTTCAT TTTTCAAGCC AAGGCCCCTC TGTGCTTCAT TGTAACAGTG
  AATGGGGAAA CATCTTGAAG TAGTCCTTAA TCTCCCCACA CTCAGTAACA TTGTATTCCA
  TTTCATTAAG GATGAAAGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47001016	NES10875934	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30955443					SNP	G	G	G	G	G	G	G	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001016	NES10875934	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138557235 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586211	regulatory region 586211			1008 bp distal
Rr586212	regulatory region 586212			6 bp proximal
Rr586213	regulatory region 586213			1642 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant