rs30954500 SNP Detail

Summary

• ID
  rs30954500
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138555796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTTCTC GTTCAGACTG
  GATTACACCC ACATCAGCCT GAATCTCACT ACCGCTGCCA TGCTCAGTCT TCAGATGAAT
  CCAAGACTTG CCCTGTGACT CCTTGTTTTA ATTAGCTGGC TTGGGTTAAG TACAAGGGCT
  AATTGCTCCA GTCTGGCCCC TGGGTTTGGT TGTTTTGTTC AATTTACTTA TGTAAGCAGG
  Y
  GTTCTCTATG CAAACATTTG TGGAAGTCAC AATCCCAAAA CAGAGTAAAT ACAGAAGCAG
  GCTGCACACT GCAGCAGTGT TTTAGCGACA GTGAGAAAAC ATCATCTGTT CCTTCTCCTA
  CTTGGGGCTA GCGTGAGCTC TGTTGGTTTG CTAATGTTCT TTGCAGTTGA TTGATGGATT
  CATCGGGGAT TTTGTACCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47001002	NES10875921	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30954500					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001002	NES10875921	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138555796 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586211	regulatory region 586211			within coordinates
Rr586212	regulatory region 586212			1445 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant