rs30954200 SNP Detail

Summary

• ID
  rs30954200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50481653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAC TGGGGGTGGG GGGGGGGGAA
  Y
  GACACAGAGA AGACATAGAA TAAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45982633	mCV22332688	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss133181574	ENSMUSSNP1037942	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss321798295	CHEV_6_50454672	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30954200					SNP	T	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50481653 () rs orientation: forward

Symbol	Name	Function Class
Gm40372	predicted gene, 40372	within coordinates
Rr630019	regulatory region 630019	111 bp proximal
Tssr60917	transcription start site region 60917	1048 bp downstream