rs30954056 SNP Detail

Summary

• ID
  rs30954056
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138565170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCAGTCA TTGGTTAGAT
  CAGGCAAGGC CTGCAGGCTC TGGGAAGCCA AAGAACCCTT CAGGGATTCC TGCCCCATCT
  GAGGACACAG TGTAGTCTTC TCAGTGGCCT GTGCAGCCTG ACACAGCCTG GCTACTGTGA
  GCCTCTGAGC TGTGCTTCTC CGTTCCTGGC ACTTTGTGTC CCGCTTTGTC GCCATCTGTC
  Y
  GGGGCCTCAG TCCAGATGTC TGGCTTCGGC TAGGGTGCTG TTCGGACATC CGCCAGTCAG
  CTCTTCCTTC CTTCATGGTG CCCAATGAAC ATGTATTTTT TTCCCCTTAA TATTTATTTT
  GTTTTTATTT ATGTGTCTCT CTGTGTGTAT GCTCCAAAGA GGATGTTTAA TCCCCTGAAC
  TAGTGGGGCT TGAACTAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47001102	NES10875649	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30954056					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001102	NES10875649	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138565170 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm65713	predicted gene, 65713			within coordinates
Rr586215	regulatory region 586215			1850 bp distal
Rr586216	regulatory region 586216			741 bp distal
Rr586217	regulatory region 586217			within coordinates
Rr586218	regulatory region 586218			1067 bp proximal
Rr586219	regulatory region 586219			1095 bp proximal
Rr586220	regulatory region 586220			1561 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant
Tssr1062	transcription start site region 1062			1108 bp upstream
Tssr32014	transcription start site region 32014			1080 bp upstream