rs30954054 SNP Detail

Summary

• ID
  rs30954054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138564947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGCTCT GAGGACAAGG
  GGGCCTGAGT TCATCTTCTA CCAGGGCTTT TCTGACTCTG AAAGGGGAGC TGCCTGTTAA
  GGTGGCCACT GTGGGAGGAG TTGGGGAGCA GGCAGGGTAA TGTCTGAGGA GCGATGGGGG
  GCAGGGAATA ATCTGCACAG ACTCCTTGCT TACAGTTGGC TTTCATGTGG TTTCGTGGAC
  Y
  CCACAGTTTG CAGCAGTTAG TAACATCAGT CATTGGTTAG ATCAGGCAAG GCCTGCAGGC
  TCTGGGAAGC CAAAGAACCC TTCAGGGATT CCTGCCCCAT CTGAGGACAC AGTGTAGTCT
  TCTCAGTGGC CTGTGCAGCC TGACACAGCC TGGCTACTGT GAGCCTCTGA GCTGTGCTTC
  TCCGTTCCTG GCACTTTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47001100	NES10875646	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30954054					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001100	NES10875646	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138564947 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm65713	predicted gene, 65713			within coordinates
Rr586215	regulatory region 586215			1627 bp distal
Rr586216	regulatory region 586216			518 bp distal
Rr586217	regulatory region 586217			within coordinates
Rr586218	regulatory region 586218			1290 bp proximal
Rr586219	regulatory region 586219			1318 bp proximal
Rr586220	regulatory region 586220			1784 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant
Tssr1062	transcription start site region 1062			1331 bp upstream
Tssr32014	transcription start site region 32014			1303 bp upstream