rs30953316 SNP Detail

Summary

• ID
  rs30953316
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138564070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGATTTTA TTGCTTGCGT
  AGCCGTCCCC CTCCCCATCT CAGATTACAA GCTCTTGCTC AAAATGTCAA GGTCCAAGTT
  CTAACAAAGA GCTCTCTAGA CCAGACTGCC TCAGACTGTG GGCATTTCTT TAAGGCCTTC
  TCCTGGAACA GTGTGCATTC AAAGGGAAAA GCCCTTTCAT CGTCTCTGGG AAGATACTGC
  K
  GGCTCTTGGT GCTACGCAGT TCCAAAGAAG TCCCCCTCCT GGCCCCTTTT TCCTTTCCCA
  GGCTCTGTGT GATGGACTGC TCCAGATCCT GTTCTTGGCT TCGAGCCCCA GCAGTCTGTG
  TCCGCAATCC CATAAACAAG CAGAGGACTA GCCCTTCAGG TGGATGGTGG AGACTGAATT
  AAGTATTCTT GCCTCTCGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47001092	NES10875639	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30953316					SNP	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001092	NES10875639	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138564070 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm65713	predicted gene, 65713			within coordinates
Rr586215	regulatory region 586215			750 bp distal
Rr586216	regulatory region 586216			within coordinates
Rr586217	regulatory region 586217			590 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant