rs30953007 SNP Detail

Summary

• ID
  rs30953007
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90415134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGT AGGTGGCTCC CTTTGAGTTC
  S
  AGGCTAGCCA GGTCTACATA GCAAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45483042	mCV23476243	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C
ss320837920	CHEV_3_90311749	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30953007					SNP	G	G	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90415134 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chtop	chromatin target of PRMT1			Intron
				Noncoding-Transcript-Variant
Cpgi13465	CpG island 13465			934 bp proximal
Gm56783	predicted gene, 56783			1137 bp upstream
Rr397813	regulatory region 397813			1549 bp upstream
Rr580381	regulatory region 580381			647 bp proximal
Rr580382	regulatory region 580382			1075 bp proximal
Rr580383	regulatory region 580383			1613 bp proximal
Tssr30207	transcription start site region 30207			1250 bp upstream
Tssr30208	transcription start site region 30208			1813 bp upstream
Tssr34235	transcription start site region 34235			1446 bp upstream
Tssr34236	transcription start site region 34236			232 bp downstream
Tssr34237	transcription start site region 34237			900 bp downstream
Tssr34238	transcription start site region 34238			1629 bp downstream
Tssr34239	transcription start site region 34239			1690 bp downstream