rs30952395 SNP Detail

Summary

• ID
  rs30952395
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138562605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGATGGC TCAGCTGTTA
  ACAGCACCTC TTGTTCTTAC AGAAGACTCA GGTTTGCTTT CCAGTATCTT CCTAGTACCT
  TGTAACCCAG TTCTAGGTGC CTCCTTCTGT CCTTTCTGGA CACAAGGCAC ACATATGACA
  CGCTCGTACC TGTAGGCAAA GCACTCATTC ACATAAAATA AAAACCAACC TTTTTCTTTA
  W
  AAAAGCCACG CATCTCGGTG ACTGTGCAGG CAGGTTACGG AGAGAGCTGG CTGCCTTCAG
  CCAGTTTTCA TGGGGCGGGA TGAGGGATGC CTGAGATGGT GCATTTCTGA TAAGTCCCCT
  GGTGCAGAGC CATCCTGTGA GGACCACTGC TGGCCTGAGC CTTGTCGCAC GCACGCATAC
  TTGCAGACCC CTCAAGGGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47001080	NES10875702	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30952395					SNP	A	A	A	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001080	NES10875702	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138562605 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm65713	predicted gene, 65713			1108 bp downstream
Rr586214	regulatory region 586214			1462 bp distal
Rr586215	regulatory region 586215			within coordinates
Rr586216	regulatory region 586216			844 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant