rs30950716 SNP Detail

Summary

• ID
  rs30950716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138567676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTCCTTT CCAGTTTTGC
  CAAAGCATCA GTTGTGCTGG CTCTGGAATC CAGGTCTAGC TTCCGTCACT GTACCACTCT
  TGGTTCCCAT GGGGCCATTC TCAGTTCTGG CAGAAGAATG CACCTTGGAT GCCTAGACAT
  CAGAGGAGCA ACTTAGAGTA TTAGGGCAAG CACTTCCCAG TGTTTCCACT GTGAGCTGGT
  Y
  TATATAGAGA GGGCGTTTTA GACATTAGGG GACACACAGG ATGAGCATGC TCAATCTGAA
  AAACCATAGG TTTGTAAGTA CCGCTCTAAT GGCTGAAAGG TTTTGGATTT TCATGCTAAA
  GCTGTTTAAC TGTAGTAACC AGCAAAGTCT ATGCAAATAT ACCCCAATTC AGTAAACTCT
  GAAATATGAA ATACTCCGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47001156	NES10875580	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30950716					SNP	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001156	NES10875580	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138567676 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm65713	predicted gene, 65713			1429 bp upstream
Rr586217	regulatory region 586217			1697 bp distal
Rr586218	regulatory region 586218			1412 bp distal
Rr586219	regulatory region 586219			1249 bp distal
Rr586220	regulatory region 586220			179 bp distal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant
Tssr1062	transcription start site region 1062			1388 bp downstream
Tssr32014	transcription start site region 32014			1409 bp downstream