rs30950714 SNP Detail

Summary

• ID
  rs30950714
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138567501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAAAGGT GGCTTTTTGA
  AGTGTCCATT TCGTGCCAGT TGGGATGGGA CACTGTTCCA GTCCAAAACA ATGGAGTCTG
  CCAGGATGAA AATAACTGGA TATGGAAGAA GAGCTTTTCC ACTTGACAGT GGGGCAGATG
  CATCCTTCTG GAATCACCCT GTGACACCCG AGACTATTTT CCTTTCCAGT TTTGCCAAAG
  M
  ATCAGTTGTG CTGGCTCTGG AATCCAGGTC TAGCTTCCGT CACTGTACCA CTCTTGGTTC
  CCATGGGGCC ATTCTCAGTT CTGGCAGAAG AATGCACCTT GGATGCCTAG ACATCAGAGG
  AGCAACTTAG AGTATTAGGG CAAGCACTTC CCAGTGTTTC CACTGTGAGC TGGTCTATAT
  AGAGAGGGCG TTTTAGACAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47001154	NES10875577	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30950714					SNP	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001154	NES10875577	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138567501 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm65713	predicted gene, 65713			1254 bp upstream
Rr586217	regulatory region 586217			1522 bp distal
Rr586218	regulatory region 586218			1237 bp distal
Rr586219	regulatory region 586219			1074 bp distal
Rr586220	regulatory region 586220			4 bp distal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant
Tssr1062	transcription start site region 1062			1213 bp downstream
Tssr32014	transcription start site region 32014			1234 bp downstream