rs30950265 SNP Detail

Summary

• ID
  rs30950265
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17107446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTTGTTG TTAGTTGATG
  CCCATGTTTG CTTCTGTTGC TATGATAAAC ACCATTACCA TAAACAGTTT CAGAGGGCAT
  TTGGCTTACA GATTAGAATC CCTTATTGAG GGAAACTCAG AAAGGATCCT AGAGCCAGAA
  ACTGAAACAG ACTTTGGAGA AATGTTTCTA CCATCTTGTT CCTTTTGCCT TTCTTACACA
  R
  CTCAGGCACA TTTGCCTAGG AATGATACCG CCCACAGTGG GCTGGGCCCG CCTTCATCCA
  TTAGCAATAA AAGAAAATGC CTCATACACA CATCTCTTTT CAAGAGTCTA CAACACTGGT
  TCTCAACCTG TGTGTTGCGG CCCTTTCACT GGGGTCTCAA GGCCATCTGA AAACAGGTAA
  TTACTTTACC ATTTGTAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss45981806	mCV24739084	ABI	CRAMUS_MOUSE	f	SNP		G	A				A
ss47808596	NES11712748	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A		G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs30950265					SNP	G	G	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47808596	NES11712748	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17107446 () rs orientation: forward

Symbol	Name	Function Class
Gm4876	predicted gene 4876	within coordinates
Gm53251	predicted gene, 53251	within coordinates
Rr626764	regulatory region 626764	1396 bp distal
Rr626765	regulatory region 626765	1543 bp distal
Rr626766	regulatory region 626766	1654 bp proximal
Tes	testin LIM domain protein	1622 bp downstream