rs30949808 SNP Detail

Summary

• ID
  rs30949808
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138567151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCTCCT CAGTGCCAGC
  CTGTCCCACC CACTCCCACC CACCACTCAG TCTCACAGAT GGTCCCTGAG AATCCTCCTG
  TCACCAGGGT GATGAATGGG CGCCTTACAA GGTCCAAAAG TGCCGTGCCA CACTTGCGTC
  TCTGATTGCA TGCCAGCCCC TCCCATCTGC TGTTGTTAGC CACACAGATT TGGTGACTTG
  W
  AATTCTCTCC TTACCACGGG GCAGTTTTAT TCTTTCGTGA CCTGAAAGTC CTCTGAACTG
  TAAGAGCTAT GTCTGTTTTT TCTTATCTCC TTTTATCTTG AGACGTGTAA GGTCAAGTAT
  AAAGTTGGGA CTCAAAGCGA CTTGGAATAC TGGAAAGGTG GCTTTTTGAA GTGTCCATTT
  CGTGCCAGTT GGGATGGGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47001148	NES10875569	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30949808					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001148	NES10875569	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138567151 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm65713	predicted gene, 65713			904 bp upstream
Rr586217	regulatory region 586217			1172 bp distal
Rr586218	regulatory region 586218			887 bp distal
Rr586219	regulatory region 586219			724 bp distal
Rr586220	regulatory region 586220			within coordinates
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant
Tssr1062	transcription start site region 1062			863 bp downstream
Tssr32014	transcription start site region 32014			884 bp downstream