rs30949121 SNP Detail

Summary

• ID
  rs30949121
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:101042083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTAAATTT GGGCAGCCTA
  CCCTATTGAG ACCTGGAAGA CAGAGTTTGA TAAGCCCGGA GAGTTCTACG GTGGGTTAGT
  CTGAGCATCA TTTTGTTTAC TTTGCATAAT TTTGTATCAC TTTTCTATTC CATCTTGTTT
  GAGTGTGTAT GTGCATGTGC ATGTGTGGAG GTTAGGGACA GCTTGTGGGA GTTGTGTTTT
  Y
  CCTCCTCCTA TCAGGTGGGT TCTGGGGGGC ACCCTGGAGT GAGTGCTCAG ACTGTAGGCT
  CATTTACATG CAGAGGCATC TCATTGGCCC CCGAATATCA TGAGATGCAG GTGACCTGTG
  AGCGTGATAG AGTCTGGTTT TCTCTTTTGC TAGAATCAGG GAGACTTCAA ATCTCATCCC
  CATGGGTCCA TGACTCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45980726	mCV23117115	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss133429421	ENSMUSSNP3959181	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				T
ss321872872	CHEV_6_101015116	CHEVERUD	SCREENING_POP	f	SNP					C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs30949121					SNP	C	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:101042083 () rs orientation: forward

Symbol	Name	Function Class
Gm43948	predicted gene, 43948	within coordinates
Gm43950	predicted gene, 43950	within coordinates
Rr635751	regulatory region 635751	1047 bp distal