rs30949046 SNP Detail

Summary

• ID
  rs30949046
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138558247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGAAACCT CACACAGAGG AGAAGGAATA CAGATACCTT
  AATCATACGC CGTCTCTCAC ATCTGGAGCT CAGTTTTGTG CTTCTAATGA TGGCGTTCAG
  W
  GAAGAGCAGG ACCCATTTTA CGTTGACACA AATTATCTAC CCAAAGGCTG ACCTTATTTA
  AAGGAAGTGA TTCAATTTAG AAAGGTTGTC CCCATTCAAT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47001040	NES10875951	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30949046					SNP	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001040	NES10875951	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138558247 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr398073	regulatory region 398073			1533 bp upstream
Rr586212	regulatory region 586212			41 bp distal
Rr586213	regulatory region 586213			630 bp proximal
Rr586214	regulatory region 586214			1396 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant